Data of FAD Binding Proteins

The FAD binding proteins dataset from this web-server retrieved from UniProt database. There are totally 61 FAD binding proteins used in this study. The collected protein sequences in were divided into two datasets: the training dataset and the independent test dataset. In this phase, the training dataset is used for identifying FAD binding sites in electron transport proteins; the independent test dataset is used to evaluate the performance of the proposed method. We use all 6 FAD binding proteins in electron transport chain as independent testing, then the training dataset includes 55 general FAD proteins (contains 863 FAD binding and 24408 Non-FAD binding). The details of all datasets are listed in this table.

No.	Protein	Name	Length	FAD	Non FAD
1	P00455	Ferredoxin--NADP reductase, chloroplastic	369	12	357
2	Q9YHT1	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	665	26	639
3	Q92947	Glutaryl-CoA dehydrogenase, mitochondrial	438	17	421
4	Q945K2	(R)-mandelonitrile lyase 2	563	16	547
5	Q8X1D8	Nitroalkane oxidase	439	23	416
6	Q47PU3	Phenylacetone monooxygenase	542	12	530
7	Q52437	Ferredoxin reductase	408	16	392
8	P45954	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial	432	23	409
9	P47989	Xanthine dehydrogenase/oxidase	1333	17	1316
10	P15651	Short-chain specific acyl-CoA dehydrogenase, mitochondrial	412	22	390
11	O54050	Xanthine dehydrogenase	462	22	440
12	C6ELC9	tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC	668	17	651
13	Q96329	Acyl-coenzyme A oxidase 4, peroxisomal	436	26	410
14	Q9AL95	NADH-rubredoxin oxidoreductase	379	7	372
15	Q8DMN3	Tll0078 protein	143	7	136
16	Q2GBV9	FAD-dependent pyridine nucleotide-disulfide oxidoreductase	415	13	402
17	Q389T8	Trypanothione reductase	492	15	477
18	P39662	Flavohemoprotein	403	9	394
19	P41367	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	421	26	395
20	P19920	Carbon monoxide dehydrogenase medium chain	288	10	278
21	O53355	NAD(P)H dehydrogenase (quinone)	493	13	480
22	D0VWY5	Glutathione amide reductase	463	12	451
23	Q9HJI4	Probable thioredoxin reductase	319	12	307
24	Q9HKS9	Digeranylgeranylglycerophospholipid reductase	396	18	378
25	Q7X2H8	Choline oxidase	546	21	525
26	Q7ZA32	Pyranose 2-oxidase	623	24	599
27	P37747	UDP-galactopyranose mutase	367	14	353
28	P38038	Sulfite reductase [NADPH] flavoprotein alpha-component	599	7	592
29	P00390	Glutathione reductase, mitochondrial	522	9	513
30	P07342	Acetolactate synthase catalytic subunit, mitochondrial	687	42	645
31	Q03103	Endoplasmic oxidoreductin-1	563	6	557
32	O60341	Lysine-specific histone demethylase 1A	852	9	843
33	Q9HTK9	Rubredoxin-NAD(+) reductase	384	23	361
34	Q7SID9	Oxidoreductase	561	18	543
35	Q7WZ62	Putative hexose oxidase	523	20	503
36	Q28943	Dihydropyrimidine dehydrogenase [NADP(+)]	1025	27	998
37	P97275	Alkyldihydroxyacetonephosphate synthase, peroxisomal	658	25	633
38	O95831	Apoptosis-inducing factor 1, mitochondrial	613	14	599
39	P00371	D-amino-acid oxidase	347	30	317
40	P09622	Dihydrolipoyl dehydrogenase, mitochondrial	509	20	489
41	O52582	Coenzyme A disulfide reductase	438	38	400
42	Q9RSY7	Thioredoxin reductase	325	14	311
43	Q9UBK8	Methionine synthase reductase	725	9	716
44	Q5UVJ4	Thymidylate synthase ThyX	208	14	194
45	Q709F0	Acyl-CoA dehydrogenase family member 11	780	29	751
46	P66004	Dihydrolipoyl dehydrogenase	464	11	453
47	Q0QLF4	Nicotinate dehydrogenase FAD-subunit	296	18	278
48	P49748	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	655	16	639
49	P55789	FAD-linked sulfhydryl oxidase ALR	205	26	179
50	P0A6U3	tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG	629	1	628
51	Q96HE7	ERO1-like protein alpha	468	7	461
52	Q9UKU7	Isobutyryl-CoA dehydrogenase, mitochondrial	415	24	391
53	Q5SJP8	4-hydroxyphenylacetate 3-monooxygenase oxygenase component	481	12	469
54	Q5SK63	Putative glutaryl-CoA dehydrogenase	385	17	368
55	P55931	Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial	617	6	611
56	Q5SH33	GidA-related protein	232	10	222
57	P21890	Ferredoxin--NADP reductase	440	12	428
58	P26440	Isovaleryl-CoA dehydrogenase, mitochondrial	423	23	400
59	P07872	Peroxisomal acyl-coenzyme A oxidase 1	661	2	659
60	P08165	NADPH:adrenodoxin oxidoreductase, mitochondrial	492	8	484